PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g09040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 332aa    MW: 37360.1 Da    PI: 4.5958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g09040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12164207654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Vradi11g09040.1 164 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 207
                      589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-15161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9164207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14165220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-4165211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELSQLGFLD ELLAPRKDTW SALSTGLNEL LPSAWSFDSF DENQGLATLN PSFAAFSTPL  60
DHRFECPYAS EETHPFVDEF SLPELESLYT RNDESAPVLP QEDNPSLEDE EFGFLGSDNQ  120
SLEQAKNGCK IEEQLTEIPV FNVGLCAEKK LKSKKLEGQP SKNLMAERRR RKRLNDRLSM  180
LRSIVPKISK MDRTSILGDT IDYMKELLER IGKLQEEEME EGTNHINLLG NSKELKPNEA  240
MVRNSPKFDV ERRQHDTRIS ICCATKLGLL LSTVNTLEAL GLEIHQCVIS NFNDFSMQAT  300
CSEAAEQRNC TSPEDIKQAL FRNAGYGGRC L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310970.0KT031097.1 Glycine max clone HN_CCL_167 bHLH transcription factor (Glyma01g02390.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519976.10.0PREDICTED: transcription factor bHLH93 isoform X1
SwissprotQ9LSL15e-89BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0L9UXV20.0A0A0L9UXV2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T2M30.0A0A0S3T2M3_PHAAN; Uncharacterized protein
STRINGGLYMA01G02390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-90beta HLH protein 93